National Microbiome Data Collaborative

nmdc-api-utilities

Last released May 28, 2026

Deprecated — this package has been renamed to 'nmdc-client'.

refscan

Last released Nov 22, 2025

Command-line program that scans the NMDC MongoDB database for referential integrity violations

nmdc-runtime-client

Last released Aug 14, 2022

Client for the NMDC Runtime

nmdc-client

Last released May 28, 2026

Python client library for the NMDC API (formerly nmdc-api-utilities)

nmdc-metadata-suggestor-ai-tool

Last released Jun 24, 2026

NMDC Submission portal metadata suggestor tool, powered by AI

nmdc

Last released Jan 29, 2021

Command line toolbox of NMDC (https://microbiomedata.org/)

nmdc-schema

Last released Jun 23, 2026

Schema resources for the National Microbiome Data Collaborative (NMDC)

nmdc-mcp

Last released Aug 12, 2025

FastMCP-based tool for writing prompts against data in the NMDC (National Microbiome Data Collaborative) database

nmdc-runtime

Last released Jun 29, 2026

A runtime system for NMDC data management and orchestration

nmdc-submission-schema

Last released Jun 25, 2026

The NMDC submission schema

mutts

Last released Mar 31, 2026

Metadata for User facility Template Transformations

ontology-loader

Last released Jun 3, 2026

ontology_loader

nmdc-geoloc-tools

Last released Oct 28, 2025

NMDC library to request geolocation information including elevation, soil type, and landuse