Ancestral Karyotype Reconstruction Universal Pipeline
Project description
AKRUP
AKRUP: Ancestral Karyotype Reconstruction Universal Pipeline
| Author | wangjiaqi |
| wangjiaqiky@163.com | |
| License | BSD |
Description
Include a "from the bottom up On "ancestral karyotype inference and a" top-down"inference of the evolutionary trajectory of ancient chromosomes
Installation
python setup.py build install
The AKRUP requires the following dependencies :
-
Python (>3.7) with matplotlib, biopython, click, numpy，pandas, and scipy libraries. Note that the current version no longer supports python 2.
-
R with the ggridges and ggplot2 packages.
-
perl with the BioPerl packages.
Dependent third party software that has been integrated：
| clustalw2 | Larkin et al., 2007 |
| ColinearScan | Wang et al., 2006 |
| blast+ | Camacho et al., 2009 |
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