ATACFragQC
The Python toolkits designed to control the fragment quality of Bulk/SingCell ATAC-seq.
Installation
python3 -m pip install --upgrade ATACFragQC
Usage
# Basic usage
ATACFragQC [options] -i <input.bam> -r <reference.gtf>
# For more information
ATACFragQC -h
Features
- The distrubution of fragments in chromosomes
- The distrubution of fragment lengths
- The distrubution of fragments around transcription start sites (TSSs)
- Other feature would be supported in the future ...
Overview
1 maintainer
Metadata
1 maintainer
Release files for ATACFragQC 0.5.2
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| File | Size | Uploaded | Provenance | Actions |
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| ATACFragQC-0.5.2.tar.gz | 6.4 kB | Without provenance | Details for ATACFragQC-0.5.2.tar.gz |
Release files / ATACFragQC-0.5.2.tar.gz
| Download URL | ATACFragQC-0.5.2.tar.gz |
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| Size | 6.4 kB |
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