A simple bioinformatics script.
Project description
Assess genome annotations using structure databases with Prost5
Structural databases for protein sequences are invaluable tools for informing the validity of gene predictions from annotations.
Currently, generating structures for all genes at the level of eukaryotic genomes is computationally challenging.
Recent advances in transformer representations of amino acid sequences using the ProstT5 ...
Installation
You can install the released version of AnnotationCheckerWithStructure from PyPI:
pip install AnnotationCheckerWithStructure
Usage
AnnotationCheckerWithStructure
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
File details
Details for the file annotationcheckerwithstructure-0.1.3rc0.tar.gz.
File metadata
- Download URL: annotationcheckerwithstructure-0.1.3rc0.tar.gz
- Upload date:
- Size: 3.8 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/5.1.0 CPython/3.9.19
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | fe44b0458083b42e0dff77ae85811d010482606d84c8cc8997f0db9a544b011a |
|
| MD5 | e08a4bc9076f1ca52179b791974412af |
|
| BLAKE2b-256 | f24c408b691d6727e502d1507ef3a5176ce7bd42b4cffe4629124aed78622dbf |
File details
Details for the file AnnotationCheckerWithStructure-0.1.3rc0-py3-none-any.whl.
File metadata
- Download URL: AnnotationCheckerWithStructure-0.1.3rc0-py3-none-any.whl
- Upload date:
- Size: 2.9 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/5.1.0 CPython/3.9.19
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 84b67e35e5a24572741dd94f00537fb75fc84151048e2ac7629c91281668cc25 |
|
| MD5 | cb041a75e55e2726f5b518fd0bedcfde |
|
| BLAKE2b-256 | ce3ca181a94ed0f9bc8225cd65d90d71e4a77fad32b3cb0168c8e76711c15f9b |
