A collection of tools to visualize CAMI profiling outputs
Project description
CAMIProfilingVisualization
A collection of tools to visualize CAMI profiling outputs
Installation
Use conda
conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge
conda create -c etetoolkit -y -n CAMIViz python=3.7 numpy ete3 seaborn pandas matplotlib biom-format
conda activate CAMIViz
Example usage
python src/profile_to_plot.py -i data/prediction_multi.profile -g data/ground_truth_multi.profile -b test -s sample_0 genus
This should result in a plot that looks like:
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