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A toolkit for extracting chemical information from the scientific literature.

Project description

ChemDataExtractor-IDE is an extension of the ChemDataExtractor repository with the functionality to identify microscopy images automatically.


To install ChemDataExtractor, clone the repository with:

git clone

and run:

python install

Then download the necessary machine learning models with:

cde data download


This code is intended to be used with the ImageDataExtractor software toolkit for the automatic extraction of microscopy images. Full details on installation and integration with ChemDataExtractor-IDE can be found at [dummy].

Full documentation on the general use of ChemDataExtractor is available at


ChemDataExtractor is licensed under the MIT license, a permissive, business-friendly license for open source software.

Project details

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