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Translates and transcribes an arbitrary genetic sequence, generates FASTA-formatted files, and interfaces with BLAST databases to identify genetic and protein sequences.

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The Codons module is a lightweight tool for 1) conducting transcription and translation of genetic sequences, either from a FASTA format or a string; 2) making and reading FASTA or multi-FASTA files; and 3) conducting BLAST searches of protein and nucleotide sequences. Example Notebooks of these features are offered in the “examples” directory of the Codons GitHub repository.


The following command installs Codons in a command prompt/terminal environment:

pip install codons

The full documentation is available on ReadTheDocs.

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