A tool for generating KEGG heatmaps from eggnog-mapper outputs.
Project description
KEGGaNOG
Motivation
eggNOG-mapper
is a beautiful tool for fast functional annotation of novel sequences. Yet it does not provide any visualization functions.KEGG-Decoder
is a perfect tool for visualizing KEGG Pathways. But it takes only KEGG-Koala outputs (including blastKOALA, ghostKOALA, KOFAMSCAN).KEGG-Koala
is a web-tool which can work for more than 24 hours.eggNOG-mapper
can be installed locally on your PC / server and work faster.- This tool
KEGGaNOG
makeseggNOG-mapper
meetKEGG-Decoder
! It will parseeggNOG-mapper
output, make it fit for the input toKEGG-Decoder
and then visualize KEGG Pathways as the heatmap! - Pro-tip:
eggNOG-mapper
andKEGGaNOG
could be wrapped into 🐍Snakemake
pipeline to make metabolic profiling a "one-click" process!
Installation
KEGG-Decoder
is hardwired into KEGGaNOG
.
KEGG-Decoder
uses python=3.6
.
That's KEGGaNOG
uses this version too.
conda create -n kegganog python=3.6
conda activate kegganog
pip install kegganog
Usage Guide
🔗 Visit KEGGaNOG wiki page
Contributing
Contributions are welcome! If you have any ideas, bug fixes, or enhancements, feel free to open an issue or submit a pull request.
Contact
For any inquiries or support, feel free to contact me via email
Happy functional annotation! 💻🧬
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KEGGaNOG-0.1.1.tar.gz
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