Python wrapper for NiftyRec, NiftyReg and NiftySeg: tomographic reconstruction, volumetric registration and segmentation.
Registration, segmentation, tomographic reconstruction. Python wrapper of NiftyRec, NiftyReg and NiftySeg.
Typical usage looks like this:
#!/usr/bin/env python from NiftyPy import NiftyRec
… more documentation is required, for now look at how this package is utilized in occiput.io While NiftyPy is just a Python wrapper of the NiftyRec, NiftyReg and NiftySeg libraries, occiput.io provides a high level interface for tomographic reconstruction (SPECT, PET, CT) and for other imaging tasks. It’s easies, with occiput.io, to define the system geometry and reconstruct with iterative algorithms.
Linux, MacOsX, Win
There are two ways to install under Linux and MacOsX and Windows:
- If you have pip installed:
pip install niftypy
- download source files, uncompress, at the command line cd to the downloaded folder and run:
python setup.py build test install