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A small package to store some functions for the PrimerDesignAg notebook, to improve readability.

Project description


DOI

Primer Design in Anopheles gambiae s.l taking into account SNP variation in primer binding sites, using primer3-py and malariagen_data. Supports:

  • genomic DNA primers
  • quantitative PCR primers (cDNA, designed to span exon-exon junctions)
  • probe design

------------>------------>------------>------------> Open In Colab <------------<------------<------------<------------

Release notes

  • 0.3.2 - minor fix to remove printing of variable in plot_primer_ag3_frequencies()
  • 0.3.1 - minor fix to bug introduced in 0.3.0 to plot_primer() function
  • 0.3.0 - Support for probe design added, functions restructured to accommodate this

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AgamPrimer-0.3.4.tar.gz (7.7 kB view details)

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