A variant annotation package
Project description
Annotation of Identified Variants
Annotation of Identified Variants to Create Reports for Clinicians to Assist Therapeutic Decisions
Prerequisites
It requires three main modules: pandas, myvariant and reportlab
pip install pandas
pip install myvariant
pip install reportlab
Installation
pip install aiv
Upgrade
pip install aiv --upgrade
Usage
import aiv
# Get variant info
aiv.getvariant('chr1', 69635, 'G', 'C')
# Annotate variants
aiv.annotate_mutations('variant_calls.tsv')
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