A lightweight Bioinformatics library
Project description
Ambio
A light-weight bioinformatics library written in Python.
Installation
Run the following command in a terminal to install:
$ pip install ambio
Usage
You can import the EditDistance
module to calculate the edit distance between two strings of your choice, and get the table used for this computation.
from ambio.EditDistance import EditDistance
d = EditDistance("saturday", "sunday")
# get the edit distance between the two strings
print(d.getDistance())
# get the table with all the edit
# distances between the possible substrings
print(d.getTable())
Development
To install ambio
, along with the tools you need to develop and run tests, run the following command:
$ pip install -e .[dev]
Project details
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