ambio 0.3.1

A lightweight Bioinformatics library

Ambio

A light-weight bioinformatics library written in Python.

Installation

Run the following command in a terminal to install:

$ pip install ambio

Usage

You can import the distance module to calculate the edit distance between two strings of your choice, and get the table used for this computation.

from ambio.distance import editDistance, generateEditDistanceTable

# get the edit distance between the two strings
print(editDistance("sunday", "saturday"))

# get the table with all the edit
# distances between the possible substrings
print(generateEditDistanceTable("sunday", "saturday"))

Development

To install ambio, along with the tools you need to develop and run tests, run the following command:

$ pip install -e .[dev]