(Beginning of) library for analyzing ancestral reconstructions of DNA or protein sequences
Project description
anclib
Using classes and methods in anclib.py it is possible to parse and analyze text files containing results related to ancestral reconstruction of DNA or protein sequences. (Rudimentary - beginning of project)
Availability
The anclib.py source code is available on GitHub: https://github.com/agormp/anclib and can be installed from PyPI: https://pypi.org/project/anclib/
Installation
python3 -m pip install anclib
Upgrading to latest version:
python3 -m pip install --upgrade anclib
Dependencies
Python
The anclib library depends on these other python modules, which are automatically included when using pip to install:
- phylotreelib library
- sequencelib library
- NumPy package
- pandas library
- rpy2 package
- Levenshtein Python C extension module
R
The anclib.py library requires R to be installed, along with the following R-packages:
Highlights
To be written
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