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Analizer of periodic repetitions in DNA

Project description

Use aprdna to look for periodic repetitions in sequences of DNA, in the GenBank format.

Install

Use pip to install the program:

$ pip install aprdna

Usage

usage: aprdna [-h] [-a NAME] [-p PERIOD] [-t TOLERANCE] [-m LENGTH] [-r THROTTLE] path

Search for repetitions of nucleotides.

positional arguments:
path Path to Sequence file
optional arguments:
-h, --help show help message and exit
-p PERIOD, --period PERIOD
 Periodicity of the repetition
-t TOLERANCE, --tolerance TOLERANCE
 Tolerance window for the repetition
-m LENGTH, --length LENGTH
 Minimal repetition length
-r THROTTLE, --throttle THROTTLE
 Stop after so many fragments

Project details


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Source Distribution

aprdna-0.1.0.tar.gz (3.5 kB view hashes)

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