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Analizer of periodic repetitions in DNA

Project description

Use aprdna to look for periodic repetitions in sequences of DNA, in the GenBank format.


Use pip to install the program:

$ pip install aprdna


usage: aprdna [-h] [-a NAME] [-p PERIOD] [-t TOLERANCE] [-m LENGTH] [-r THROTTLE] path

Search for repetitions of nucleotides.

positional arguments:

path Path to Sequence file

optional arguments:
-h, --help

show help message and exit

-p PERIOD, --period PERIOD

Periodicity of the repetition


Tolerance window for the repetition

-m LENGTH, --length LENGTH

Minimal repetition length

-r THROTTLE, --throttle THROTTLE

Stop after so many fragments

Project details

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aprdna-0.1.0.tar.gz (3.5 kB view hashes)

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