AreTomo_CTF_for_RELION_5
For some Tomography datasets, CTFFIND doesn't give great CTF estimations whereas AreTomo2 performs better.
However, currently, CTFFIND is the only way of estimating CTF in RELION 5.
This wrapper runs the CTF estimation from AreTomo2 on .star files generated by RELION 5 and updates the defocus values.
It does not perform or overwrite tilt series alignment.
Installation
pip install AreTomo_CTF_for_RELION_5
Use
aretomo_ctf_4_relion --help
Requirements
You have AreTomo2 (only v2) installed.
Your project was carried out in RELION 5.
Still carry out a CTF estimation job in CTFFIND so RELION can get the astigmatism values.
1 maintainer
Metadata
1 maintainer
Release files for AreTomo-CTF-for-RELION-5 0.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| aretomo_ctf_for_relion_5-0.1.tar.gz | 4.3 kB | Without provenance | Details for aretomo_ctf_for_relion_5-0.1.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| AreTomo_CTF_for_RELION_5-0.1-py3-none-any.whl | Python 3 | none | any | Details for AreTomo_CTF_for_RELION_5-0.1-py3-none-any.whl |
Total release size: 9.5 kB
Release files / aretomo_ctf_for_relion_5-0.1.tar.gz
| Download URL | aretomo_ctf_for_relion_5-0.1.tar.gz |
|---|---|
| Size | 4.3 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
16a38ac59e9bba70ca55baa161beb63a1923893b214147bc46b97b80cb4d6a2a
|
|
BLAKE2b-256 checksum How to use checksums |
8fe16e6a57a17975c00dc83cce54d4a4fa975b1c589465a49c9b113321176c19
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/5.1.1 CPython/3.11.3
|
Release files / AreTomo_CTF_for_RELION_5-0.1-py3-none-any.whl
| Download URL | AreTomo_CTF_for_RELION_5-0.1-py3-none-any.whl |
|---|---|
| Size | 5.2 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
1cb1a0a774136ab8acdf4b62336be5f5f2832b2fa633caf43ea8da03c7fd9480
|
|
BLAKE2b-256 checksum How to use checksums |
0ac25b14d122a578fbc2f02c43f5c6ffcf67b6f183cb814ff359570f6b161bcd
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/5.1.1 CPython/3.11.3
|
Security for AreTomo-CTF-for-RELION-5 0.1
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
No provenance found
None of the files in this release were uploaded with provenance metadata.
A note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
To learn more about protecting yourself from malicious actors, visit our package security documentation.
