Atac Mapper
Map query scATAC-seq data to a single-cell chromatin accessibility atlas using cisTopics.
Getting started
Please refer to the documentation, in particular, the API documentation.
Installation
You need to have Python 3.10 or newer installed on your system. If you don't have Python installed, we recommend installing uv.
There are several alternative options to install atac_mapper:
- Install the latest development version:
pip install git+https://github.com/quadbio/atac_mapper.git@main
Release notes
See the changelog.
Contact
For questions and help requests, you can reach out in the scverse discourse. If you found a bug, please use the issue tracker.
Citation
If you find AtacMapper useful in your research, please, cite the following article:
@article{azbukina2025multiomic,
title={Multi-omic human neural organoid cell atlas of the posterior brain},
author={Azbukina, Nadezhda and He, Zhisong and Lin, Hsiu-Chuan and Santel, Malgorzata and Kashanian, Bijan and Maynard, Ashley and T{\"o}r{\"o}k, Tivadar and Okamoto, Ryoko and Nikolova, Marina and Kanton, Sabina and Br{\"o}samle, Valentin and Holtackers, Rene and Camp, J Gray and Treutlein, Barbara},
journal={bioRxiv},
pages={2025--03},
year={2025},
publisher={Cold Spring Harbor Laboratory},
doi={10.1101/2025.03.20.644368}
}
1 maintainer
Metadata
1 maintainer
Release files for atac-mapper 0.1.0
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| atac_mapper-0.1.0.tar.gz | 14.4 kB | With provenance | Details for atac_mapper-0.1.0.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| atac_mapper-0.1.0-py3-none-any.whl | Python 3 | none | any | Details for atac_mapper-0.1.0-py3-none-any.whl |
Total release size: 23.9 kB
Release files / atac_mapper-0.1.0.tar.gz
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SHA-256 checksum How to use checksums |
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| Tags | Python 3 |
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