AUMCdb MEDS Extraction ETL
This pipeline extracts the AUMCdb dataset into MEDS format. The AUMCdb dataset is a publicly available dataset from the Amsterdam University Medical Centers (AUMC) that contains clinical data from the hospital. You first need to request access here.
Usage:
pip install AUMCdb_MEDS
MEDS_extract-AUMCdb input_dir=$RAW_DATA_DIR output_dir=$MEDS_DIR
If you want, you can also use the do_download flag to download the data directly from the AUMCdb repository.
You need to set the AUMCDB_API_KEY environment variable to your API key.
Please get it from
here: AUMCdb API Key
export AUMCDB_API_KEY=your_api_key
MEDS_extract-AUMCdb input_dir=$RAW_DATA_DIR output_dir=$MEDS_DIR
This will download the dataset automatically for you.
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Release files for AUMCdb-MEDS 0.0.3
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| aumcdb_meds-0.0.3-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 31.6 kB
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