aurora-asi-lib 0.1.3

Easily download, plot, animate, and analyze auroral all sky imager (ASI) data.

aurora-asi-lib

Easily download, plot, animate, and analyze aurora all sky imager (ASI) data. Currently the two supported camera systems (missions) are:

• Red-line Emission Geospace Observatory (REGO)
• Time History of Events and Macroscale Interactions during Substorms (THEMIS).

Feel free to contact me to add other ASI missions to this library.

Examples

Before you can run these examples you will need to configure the ASI data and movie directory via python3 -m asilib config (see the installation steps below).

Example 1

This example uses asilib to visualize a bright auroral arc.

from datetime import datetime

import matplotlib.pyplot as plt

import asilib

# A bright auroral arc that was analyzed by Imajo et al., 2021 "Active 
# auroral arc powered by accelerated electrons from very high altitudes"
frame_time, ax, im = asilib.plot_frame(datetime(2017, 9, 15, 2, 34, 0), 'THEMIS', 'RANK', 
                    color_norm='log', force_download=False)
plt.colorbar(im)
ax.axis('off')
plt.show()

Example 2

This example uses asilib to make a 5 minute movie of an auroral arc brightening right as a meteor burns up at zenith!

from datetime import datetime

import asilib

time_range = (datetime(2015, 3, 26, 6, 7), datetime(2015, 3, 26, 6, 12))
asilib.plot_movie(time_range, 'THEMIS', 'FSMI')

Installation

To install this package as a user, run:

python3 -m pip install aurora-asi-lib

To install this package as a developer, run:

git clone [e-mail]:mshumko/aurora-asi-lib.git
cd aurora-asi-lib
pip3 install -r requirements.txt

In either case, you'll need to configure your system paths to tell asilib (the import name) where to save the ASI data and movies. Run python3 -m asilib config to set up the data directory where the image, calibration, and movie files will be saved. Your settings will be stored in config.py. If you configure asilib, but don't specify a data directory, a default directory in ~/asilib-data will be created if it doesn't exist.

ffmpeg dependency

To make movies you'll also need to install the ffmpeg library.

• Ubuntu: apt install ffmpeg
• Mac: brew install ffmpeg

NOTES

• If you get the "ERROR: Could not build wheels for pymap3d which use PEP 517 and cannot be installed directly" error when installing, you need to upgrade your pip, setuptools, and wheel libaries via python3 -m pip install --upgrade pip setuptools wheel.

User Guide

Note These are top-level descriptions: The full parameter list and an example for each function is accessible via the built-in help() function.

Note 2 The longitude units are converted from 0->360 to -180->180 degrees in the calibration files.

Download ASI Data

To download ASI data, the programs in the asi-lib/download/ search for and download the THEMIS and REGO image and calibration data.

• asilib.download_themis_img() and asilib.download_rego_img(): downloads the THEMIS and REGO images in the common data format (CDF) files.
• asilib.download_themis_cal() and asilib.download_rego_cal(): downloads the THEMIS and REGO images in the common data format (CDF) files.

Load ASI Data

There are a few data loading functions that automaticaly call the download programs if a file is not found on the local computer or the user explicitly passes force_download = True to force the download. These functions are in config.py.

• asilib.load_img_file(): Returns an cdflib.CDF() file object for an ASI file specified by the date-time, mission, and station. See the cdflib documentaion for the CDF interface.
• asilib.load_cal_file(): Returns an dictionary containing the latest calibration data from a specified mission/station. Be aware that the longitude is mapped from 0 to 360 to -180 to 180 degrees.
• asilib.get_frame(): Given a mission/station and a date-time, this function calls asilib.load_img_file() and returns the time stamp and one image (frame) with a time stamp within time_thresh_s = 3 seconds (optional kwarg), otherwise an AssertionError is raised if a ASI time stamp is not found.
• asilib.get_frames(): Given a mission/station and a date-time time_range, this function calls asilib.load_img_file() and returns an array of time stamps and images observed at times inside the time_range.

Plot ASI Data

There are two modules that plot a single frame or a series of frames.

• asilib.plot_frame(): Given a mission/station and a date-time arguments, this function calls asilib.get_frame() and plots one ASI frame. By default, the color map is black-white for THEMIS and black-red for REGO, the color scale is logarthmic, and color map limits are automatically set as (25th percentile, min(98th percentile, 10x25th percentile)). This ensures a good dynamic range for each frame. The subplot object, the frame time, and the plt.imshow() objects are returned so the user can add to the subplot.

• asilib.plot_movie(): Similar to asilib.plot_frame(), given a mission/station and a time_range arguments, this function calls asilib.get_frames() and plots one multiple ASI frames and saves them to /data/movies/. Movie file creation, such as an mp4 or gif, is not implemented yet because I have not found a movie writer that is available between Windows/Linux/Mac.

• plot_movie_generator() TBD

• plot_collage(): Similar to asilib.plot_movie() in that the arguments are the same, but this function returns a collage of images with the time stamps annotated.

Mapping satellite position to the skyfield

• asilib.map_skyfield(): maps the satellite coordinates from LLA (latitude, longitude, altitudes) to the ASI image x and y pixel indices. This function relies on the azimuth and elevation calibration files that can be downloaded via asilib.load_cal_file(). This function does not map the satellite position along the magnetic field line, that is done by map_along_magnetic_field.py and requires IRBEM-Lib to be installed (beyond the scope of this user guide).
• map_along_magnetic_field.py: magnetically maps the satellite LLA coordinates with time stamps to a specified altitude. The hemisphere of the mapping can be: same, opposite, northern, or southern.

Contributing

I welcome collaboration on this project. I need the most help with keeping up with documentation, writing more unittests, and adding other ASI missions. Please contact me or start a Pull Request with your suggestions.

To install the developer dependencies, clone this repo, cd aurora-asi-lib and then run python3 -m pip install -r requirements.txt -e .

Testing

To run the asilib unit tests, change directory into asi-lib and run python3 -m unittest discover -v. These tests take a few minutes to run because it must download REGO and THEMIS image files.

These tests are continously intergrated when the main branch is updated by a GitHub runner (virtual machine) using pytest and the configuration is saved in .github/workflows/ci.yml.

Styling with black

I adoped the black style with two modifications: line length is set to 100 characters, and I suppress the double-quote string setting. To run black from the aurora-asi-lib directory, run

python3 -m black -l 100 -S asilib/.

Change version

To change the version you will need to use bumpversion to bump the version by a major X.0.0, minor, 0.X.0, or patch 0.0.X (where X is incremented). Call bumpversion [major|minor|patch] in the command line to increment the version number.