Desctiption
Common code shared among in-house Bioinformatics python packages, such as:
Parsing of FastQC output
Manipulating FASTA sequences
Building and using database of conversion GeneBank id (gi) to scientific name
Python version
This project is currently using Python 2.7
Installation
It is recommended to use virtualenv to create a clean python environment.
To install bioutils, use pip:
pip install bbcu.bioutils
Testing
To run unit tests, use:
nosetests
Or:
tox
This suite includes both unit and more time-consuming integration tests
Execution
The main script shipped with this project is gi2name.py, see its options by running:
The database is built by the script: build-taxonomy-db.py
2 maintainers
Release files for bbcu.bioutils 1.0.6
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| bbcu.bioutils-1.0.6.tar.gz | 14.1 kB | Details |
Release files / bbcu.bioutils-1.0.6.tar.gz
| Download URL | bbcu.bioutils-1.0.6.tar.gz |
|---|---|
| Size | 14.1 kB |
| Tags | Source |
|
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