bfabric 1.20.0rc1

Python client for the B-Fabric API

bfabricPy

Documentation

Package	Link	Change Log
bfabric	https://fgcz.github.io/bfabricPy	bfabric/docs/changelog.md
bfabric-scripts	https://fgcz.github.io/bfabricPy	bfabric_scripts/docs/changelog.md
bfabric-app-runner	https://fgcz.github.io/bfabricPy/app_runner/	bfabric_app_runner/docs/changelog.md

Dev preview (from main): https://fgcz.github.io/bfabricPy/dev/ | https://fgcz.github.io/bfabricPy/dev/app_runner/

Introduction

This package implements a Python interface to the B-Fabric system. Several pieces of functionality are available:

• Python API:
  • General client for all B-Fabric web service operations (CRUD) and configuration management.
  • A relational API for low-boilerplate read access to the B-Fabric system.
• Scripts: Several scripts we use more or less frequently to interact with the system.
• A REST API: A REST API to interact with the B-Fabric system. This allows us to interact with B-Fabric from R using bfabricShiny.

Howto cite?

Panse, Christian, Trachsel, Christian and Türker, Can. "Bridging data management platforms and visualization tools to enable ad-hoc and smart analytics in life sciences" Journal of Integrative Bioinformatics, 2022, pp. 20220031. doi: 10.1515/jib-2022-0031.