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BICePs - Bayesian Inference of Conformational Populations

Documentation Status

The BICePs algorithm (Bayesian Inference of Conformational Populations) is a statistically rigorous Bayesian inference method to reconcile theoretical predictions of conformational state populations with sparse and/or noisy experimental measurements and objectively compare different models. Supported experimental observables include:

Citation DOI for Citing BICePs

Check our BICePs website for more details!

Please check out the theory of BICePs to learn more.

Installation (in progress)

BICePs supports Python 2.7 (see tag v1.0) or Python 3.4+ (v2.0 or greater) on Mac, Linux, and Windows.

Dependencies of BICePs

  • pymbar >= 4.0.1
  • mdtraj >= 1.5.0
  • matplotlib >= 2.1.2
  • numpy >= 1.14.0
  • multiprocessing

View the workflow of BICePs.

BICePs is research software. If you make use of BICePs in scientific publications, please cite it.

To get started, see biceps/releases for the latest version of BICePs.

Metadata

Release files for biceps 2.0.0

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for biceps 2.0.0
File Size Uploaded Provenance Actions
biceps-2.0.0.tar.gz 51.4 kB Without provenance Details for biceps-2.0.0.tar.gz

Built distribution (wheel)

Table of built distributions (wheels) for biceps 2.0.0
File Interpreter ABI Platform Actions
biceps-2.0.0-py3-none-any.whl Python 3 none any Details for biceps-2.0.0-py3-none-any.whl

Total release size: 103.9 kB

Release files / biceps-2.0.0.tar.gz

Download URL biceps-2.0.0.tar.gz
Size 51.4 kB
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5a9a787dc789e4453290791a9c08e93d01e0300f87b0a0ae31024b94d948c8ce
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334e638f9a2183bec0e04d1c570b677e64408b5575bf6f8eccf29f65d4c1e946
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Release files / biceps-2.0.0-py3-none-any.whl

Download URL biceps-2.0.0-py3-none-any.whl
Size 52.5 kB
Tags Python 3
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63713300433128e3a7b7a03d0583b3848d5736e34ee353c7344bc3ce8fa371a5
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305210b61ea3eee8e4b881615a54b3dda49a44165579e0be45b99b20b6728e83
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Uploaded via twine/4.0.2 CPython/3.8.13

Security for biceps 2.0.0

Provenance

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None of the files in this release were uploaded with provenance metadata.

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