A BIDS conversion tool for fMRI data
Project description
The BIDSit project is a toolbox to organize MRI data into BIDS format written in Python.
Installation
Install BIDSit and its core dependencies via pip:
pip install BIDSit
Or install BIDSit by cloning GitHub, then move to where the toolbox is housed in terminal
cd path/to/BIDSit
Then run setup.py to install dependencies
Python3 setup.py install
Dependencies
All of the core dependencies of BIDSit will be installed by pip.
BIDSit requires dcm2niiX to convert the DICOM and PAR/REC files to NIfTI files. dcm2niiX can be downloaded from as part of MRIcroGL’s graphical interface from https://www.nitrc.org/plugins/mwiki/index.php/dcm2nii:MainPage#Download
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