BIDSit 0.1.0

A BIDS conversion tool for fMRI data

The BIDSit project is a toolbox to organize MRI data into BIDS format written in Python.

Installation

Install BIDSit and its core dependencies via pip:

pip install BIDSit

Or install BIDSit by cloning GitHub, then move to where the toolbox is housed in terminal

cd path/to/BIDSit

Then run setup.py to install dependencies

Python3 setup.py install

Dependencies

All of the core dependencies of BIDSit will be installed by pip.

BIDSit requires dcm2niiX to convert the DICOM and PAR/REC files to NIfTI files. dcm2niiX can be downloaded from as part of MRIcroGL’s graphical interface from https://www.nitrc.org/plugins/mwiki/index.php/dcm2nii:MainPage#Download