biobb-io 0.1.4

Biobb_io is the Biobb module collection to fetch data to be consumed by the rest of the Biobb building blocks.

biobb_io

Introduction

Biobb_io is the Biobb module collection to fetch data to be consumed by the rest of the Biobb building blocks. Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over popular bioinformatics tools. The latest documentation of this package can be found in our readthedocs site: latest API documentation.

Version

v0.1.4 February 2019 Release

Installation

Using PIP:

• Installation: pip install "biobb_io>=0.1.4"
• Usage: Python API documentation

Using ANACONDA:

• Installation:

    conda install -c bioconda "biobb_io>=0.1.4"
  

• Usage: With conda installation BioBBs can be used with the Python API documentation and the Command Line documentation

Using DOCKER:

• Installation:

    docker pull mmbirb/biobb_io:0.1.4
  

• Usage:

    docker run mmbirb/biobb_io:0.1.4 <command>
  

The command list and specification can be found at the Command Line documentation.

Using SINGULARITY:

• Installation:

    singularity pull mmbirb/biobb_io:0.1.4
  

• Usage:

    singularity exec mmbirb/biobb_io:0.1.4 <command>
  

The command list and specification can be found at the Command Line documentation.

Copyright & Licensing

This software has been developed in the MMB group (http://mmb.irbbarcelona.org) at the BSC (http://www.bsc.es/) & IRB (https://www.irbbarcelona.org/) for the European BioExcel (http://bioexcel.eu/), funded by the European Commission (EU H2020 675728).

• (c) 2015-2019 Barcelona Supercomputing Center
• (c) 2015-2019 Institute for Research in Biomedicine

Licensed under the Apache License 2.0, see the file LICENSE for details.