biobb_pdb_tools
Introduction
biobb_pdb_tools is a swiss army knife for manipulating and editing PDB files. The latest documentation of this package can be found in our readthedocs site: latest API documentation.
Version
v5.3.2 2026.1
Installation
Using PIP:
Important: PIP only installs the package. All the dependencies must be installed separately. To perform a complete installation, please use ANACONDA, DOCKER or SINGULARITY.
-
Installation:
pip install "biobb_pdb_tools>=5.3.2" -
Usage: Python API documentation
Using ANACONDA:
-
Installation:
conda install -c bioconda "biobb_pdb_tools>=5.3.2" -
Usage: With conda installation BioBBs can be used with the Python API documentation and the Command Line documentation
Using DOCKER:
-
Installation:
docker pull quay.io/biocontainers/biobb_pdb_tools:5.3.2--pyhdfd78af_0 -
Usage:
docker run quay.io/biocontainers/biobb_pdb_tools:5.3.2--pyhdfd78af_0 <command>
Using SINGULARITY:
MacOS users: it's strongly recommended to avoid Singularity and use Docker as containerization system.
-
Installation:
singularity pull --name biobb_pdb_tools.sif https://depot.galaxyproject.org/singularity/biobb_pdb_tools:5.3.2--pyhdfd78af_0 -
Usage:
singularity exec biobb_pdb_tools.sif <command>
The command list and specification can be found at the Command Line documentation.
Copyright & Licensing
This software has been developed in the MMB group at the BSC & IRB for the European BioExcel, funded by the European Commission (EU Horizon Europe 101093290, EU H2020 823830, EU H2020 675728).
- (c) 2015-2026 Barcelona Supercomputing Center
- (c) 2015-2026 Institute for Research in Biomedicine
Licensed under the Apache License 2.0, see the file LICENSE for details.
Release files for biobb-pdb-tools 5.3.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| biobb_pdb_tools-5.3.2.tar.gz | 18.6 kB | Without provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| biobb_pdb_tools-5.3.2-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 60.4 kB
Release files / biobb_pdb_tools-5.3.2.tar.gz
| Download URL | biobb_pdb_tools-5.3.2.tar.gz |
|---|---|
| Size | 18.6 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/7.0.0 CPython/3.14.6
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Release files / biobb_pdb_tools-5.3.2-py3-none-any.whl
| Download URL | biobb_pdb_tools-5.3.2-py3-none-any.whl |
|---|---|
| Size | 41.8 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/7.0.0 CPython/3.14.6
|
Security for biobb-pdb-tools 5.3.2
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