Skip to main content

Biological Information Bottleneck

Project description

# bioIB bioIB package for scRNA-seq analysis

This repository provides the code for bioIB, described in our article - “bioIB: Identifying informative metagenes in single-cell RNA-seq with the Information Bottleneck algorithm”

![image](https://github.com/SimaDubnov/bioIB/assets/76960862/daf3b06c-263f-4792-9de2-3d72832b6c50)

bioIB is a novel method for scRNA-seq analysis, based on the Information Bottleneck algorithm. Given the cellular labels representing the signal of interest, such as cell type, bioIB generates probabilistic gene clusters, or metagenes, that capture the major biological processes differentially activated between the defined cellular populations.

# This repository

This repository contains:

  1. The bioIB package code.

  2. Jupyter notebook tutorial exemplifying the use of the bioIB package functions.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

bioib-0.1.0.tar.gz (1.8 kB view details)

Uploaded Source

Built Distribution

bioib-0.1.0-py3-none-any.whl (1.7 kB view details)

Uploaded Python 3

File details

Details for the file bioib-0.1.0.tar.gz.

File metadata

  • Download URL: bioib-0.1.0.tar.gz
  • Upload date:
  • Size: 1.8 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/4.0.2 CPython/3.9.2

File hashes

Hashes for bioib-0.1.0.tar.gz
Algorithm Hash digest
SHA256 1b8b4377b1e83be7ee0a276821acaec592759cf6a2b30868aa162d626a86a6dc
MD5 77a433019dd8fe2b02ed645a617ddda5
BLAKE2b-256 a5bbc04dda13b4fa6f3dc3b8101f3205f05f916fe0a26a0b6066c90616ec21c7

See more details on using hashes here.

File details

Details for the file bioib-0.1.0-py3-none-any.whl.

File metadata

  • Download URL: bioib-0.1.0-py3-none-any.whl
  • Upload date:
  • Size: 1.7 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/4.0.2 CPython/3.9.2

File hashes

Hashes for bioib-0.1.0-py3-none-any.whl
Algorithm Hash digest
SHA256 be002dc901377a09a7255f76c7d8fb531564467e71b8f3f516bbb9d72a1332ad
MD5 d1a4ee2e75d00dfff9c4b8bc2c53c6da
BLAKE2b-256 796718f95bcbd5141d4841681d4e9e1276cecc1321cf1dac5c56679fbace20b1

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page