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Project description
The is a test version
Installation
biolxyUtil runs on Python 2 and Python 3. Your operating system might already provide Python 2.7, which you can check on the command line:
python --version
If your operating system already includes Python 2.6, I suggest either using conda (see below) or installing Python 2.7 alongside the existing Python 2.6 instead of attempting to upgrade it in-place. Your package manager might provide both versions of Python.
To run the recommended segmentation algorithms CBS and Fused Lasso, you will need to also install the R dependencies (see below).
From a Python package repository
Reasonably up-to-date biolxyUtil packages are available on PyPI and can be installed using pip (usually works on Linux if the system dependencies listed below are installed):
pip install biolxyUtil
From source
The script biolxyUtil.py requires no installation and can be used in-place. Just install the dependencies.
To install the main program, supporting scripts and cnvlib Python library, use setup.py as usual:
python setup.py build python setup.py install
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