Bio Partitioner 
Install
For User
pip install biopartitioner- Demo Code:
from biopartitioner.factory import PartitionerFactory
partitioner_caller = PartitionerFactory.create_partitioner("vcf")
dataset = "fixtures/scaffold.vcf"
vcf_partioner = partitioner_caller(dataset=dataset, partition_num=8)
vcf_partioner.partition()
- You'll see vcf partition files at current folder.
For Developer
- Python dependencies:
virtualenv venv; . venv/bin/activatepip install poetrypoetry install
- Npm dependencies, for linter, formatter and commit linter (optional):
brew install npmnpm ci
Run
npm run test- You'll see 10 vcf partition files at your folder
Test
- test:
npm run test - Run all linter before commitment would save some effort:
npm run check
1 maintainer
Metadata
1 maintainer
Release files for biopartitioner 0.1.14
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Source distribution (sdist)
| File | Size | Uploaded | |
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| biopartitioner-0.1.14.tar.gz | 3.2 kB | Details |
Release files / biopartitioner-0.1.14.tar.gz
| Download URL | biopartitioner-0.1.14.tar.gz |
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| Size | 3.2 kB |
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