Bio Partitioner

Install

For User

pip install biopartitioner
Demo Code:

from biopartitioner.factory import PartitionerFactory
partitioner_caller = PartitionerFactory.create_partitioner("vcf")
dataset = "fixtures/scaffold.vcf"
vcf_partioner = partitioner_caller(dataset=dataset, partition_num=8)
vcf_partioner.partition()

You'll see vcf partition files at current folder.

For Developer

Python dependencies:
1. virtualenv venv; . venv/bin/activate
2. pip install poetry
3. poetry install
Npm dependencies, for linter, formatter and commit linter (optional):
1. brew install npm
2. npm ci

Run

npm run test
You'll see 10 vcf partition files at your folder

Test

test: npm run test
Run all linter before commitment would save some effort: npm run check

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

biopartitioner-0.1.14.tar.gz (3.2 kB view details)

Uploaded Jul 11, 2020 Source

File details

Details for the file biopartitioner-0.1.14.tar.gz.

File metadata

Download URL: biopartitioner-0.1.14.tar.gz
Upload date: Jul 11, 2020
Size: 3.2 kB
Tags: Source
Uploaded using Trusted Publishing? No
Uploaded via: twine/3.2.0 pkginfo/1.5.0.1 requests/2.23.0 setuptools/45.2.0 requests-toolbelt/0.8.0 tqdm/4.47.0 CPython/3.7.6

File hashes

Hashes for biopartitioner-0.1.14.tar.gz
Algorithm	Hash digest
SHA256	`e7b5e8c6de9e00e193ea4c99eee8685db31845b1c2c2be2f381f2e8e650f92a0`
MD5	`21b3f3fa9552fe0abb144cb434a17fbf`
BLAKE2b-256	`6ae87c28dd8c5131007343af63a74564fc021da497fdf4e89dbab0766254a5e8`