Usage
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brainprep: tools for brain MRI Deep Learning pre-processing
:+1: If you are using the code please add a star to the repository :+1:
brainprep is a toolbox that provides common Deep Learning brain anatomical, functional and diffusion MR images pre-processing scripts, as well as Quality Control (QC) routines. You can list all available workflows by running the following command in a command prompt:
brainprep --helpThe general idea is to provide containers to execute these workflows in order to enforce reproducible research.
This work is made available by a community of people, amoung which the CEA Neurospin BAOBAB laboratory.
Important links
Official source code repo: https://github.com/neurospin-deepinsight/brainprep
HTML documentation (latest release): https://neurospin-deepinsight.github.io/brainprep
Release notes: https://github.com/neurospin-deepinsight/brainprep/blob/master/CHANGELOG.rst
Where to start
Examples are available in the gallery. You can also refer to the API documentation.
Install
The code is tested for the current stable PyTorch and torchvision versions, but should work with other versions as well. Make sure you have installed all the package dependencies. Complete instructions are available here.
Contributing
If you want to contribute to brainprep, be sure to review the contribution guidelines.
Citation
There is no paper published yet about brainprep. We suggest that you aknowledge the brainprep team or reference to the code repository. Thank you.
Grigis, A. et al. (2022) BrainPrep source code (Version 0.01) [Source code]. https://github.com/neurospin-deepinsight/brainprep.
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Metadata
1 maintainer
Release files for brainprep 0.0.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| brainprep-0.0.2.tar.gz | 5.6 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| brainprep-0.0.2-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 10.1 MB
Release files / brainprep-0.0.2.tar.gz
| Download URL | brainprep-0.0.2.tar.gz |
|---|---|
| Size | 5.6 MB |
| Tags | Source |
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No |
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twine/6.0.1 CPython/3.12.3
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Release files / brainprep-0.0.2-py3-none-any.whl
| Download URL | brainprep-0.0.2-py3-none-any.whl |
|---|---|
| Size | 4.5 MB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.0.1 CPython/3.12.3
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