CaPSID: Computational Pathogen Sequence Identification
Project description
CaPSID
CaPSID (Computational Pathogen Sequence IDentification) is a comprehensive open source platform which integrates a high-performance computational pipeline for pathogen sequence identification and characterization in human genomes and transcriptomes together with a scalable results database and a user-friendly web-based software application for managing, querying and visualizing results.
Project Leader Vincent Ferretti Developement Team Ivan Borozan, Philippe Laflamme, Shane Wilson
Getting Started
You will need a MongoDB database, a Python 2.6+ installation and a Java Web Server. For more details, read the wiki:
License and Copyright
Licensed under the GNU General Public License, Version 3.0. See LICENSE for more details.
Copyright 2011 The Ontario Institute for Cancer Research.
News
1.1
Release date: 25 Nov 2011
Adds support for pair-end reads
1.0.1
Release date: 19 Oct 2011
Added support for MongoDB authentication
1.0
Release date: 12 Oct 2011
Initial release
Release history Release notifications | RSS feed
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