Count Blood Cells

Count red, white blood cells to detect various diseases such as blood cancer (leukemia), lower red blood cells count (anemia)...

Table of Contents

• Project Structure
• Install
• Usage
• Develop
• License

Project Structure

cbc/
|-- data/
|   |-- plt/...
|   |-- rbc/...
|   |-- wbc/...
|
|-- docs/...
|
|-- models/...
|
|-- output/
|   |-- plt/...
|   |-- rbc/...
|   |-- wbc/...
|
|-- AUTHORS
|-- cbc
|-- LICENSE
|-- README.md
|-- TODO.md
|-- requirements.txt 
|-- setup.py

Install

• Install straight from PyPI using pip:

$ pip install cbc

Usage

Please read cbc --help before using it -o flag is optional (defaults to out/ directory)

• Count blood cells (-r for red and -w for white):

$ cbc -r <blood-cell-image>

• Predict red blood cells (use Circle Hough Tranform and Connected Component Labeling with otsu's thresholding):

$ cbc -r -CHT -CCL -t <blood-cell-image>

• Predict white blood cells (with custom output directory):

$ cbc -w <blood-cell-image> -o outdir/

Develop

• Download the project:

$ git clone https://github.com/nemo256/cbc
$ cd cbc 

• Activate virtual environment:

$ python -m venv venv
$ source venv/bin/activate
$ pip install -r requirements.txt

• Now just adapt the code to your needs and then run using the command:

$ chmod +x cbc
$ ./cbc

License

• Please read cbc/LICENSE