CGAT-core
CGAT-core is a workflow management system that allows users to quickly and reproducibly build scalable data analysis pipelines. CGAT-core is a set of libraries and helper functions used to enable researchers to design and build computational workflows for the analysis of large-scale data-analysis.
Documentation for CGAT-core can be accessed here
CGAT-core is open-sourced, powerful and user-friendly, and has been continually developed as a Next Generation Sequencing (NGS) workflow management system over the past 10 years.
Installation
The following sections describe how to install the cgatcore framework.
The preferred method to install the cgatcore is using conda, by following the instructions on read the docs. However, there are a few other methods to install cgatcore, including pip and our own bash script installer.
Release files for cgatcore 0.6.22
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| cgatcore-0.6.22.tar.gz | 124.0 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| cgatcore-0.6.22-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 248.0 kB
Release files / cgatcore-0.6.22.tar.gz
| Download URL | cgatcore-0.6.22.tar.gz |
|---|---|
| Size | 124.0 kB |
| Tags | Source |
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No |
| Uploaded via |
twine/6.1.0 CPython/3.13.7
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Release files / cgatcore-0.6.22-py3-none-any.whl
| Download URL | cgatcore-0.6.22-py3-none-any.whl |
|---|---|
| Size | 124.0 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.7
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