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A class for checking plink bed files

Project Description

Description

This is a package for checking plink .bed files (shifted / unshifted):

  • Basic info (number of individual, number of SNPs, etc)
  • Quality control (check whether the shifting is correct)

Requirements

  • Python 3
  • pip3 for installation

Install

Using setup.py

git clone https://github.com/kindlychung/checkbed.git
cd checkbed
python3 setup.py install

Using pip:

From github:

pip3 install --upgrade https://github.com/kindlychung/checkbed.git

or from PyPI:

pip3 install --upgrade checkbed

Usage

You need put your gmail account and password in ~/.pygmailrc, for example:

# suppose the main bed file is xxx.bed
checkcoll xxx
bedinfo xxx

Change log

  • Corrected the collapsed genotype matrix
Release History

Release History

This version
History Node

0.2.8

History Node

0.2.7

History Node

0.2.6

History Node

0.2.5

History Node

0.2.3

History Node

0.2.2

Download Files

Download Files

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File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
checkbed-0.2.8.tar.gz (3.9 kB) Copy SHA256 Checksum SHA256 Source Oct 31, 2014

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