chromoscope 0.0.2

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chromoscope

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Table of Contents

• Installation
• Development
• License

Installation

pip install chromoscope

Development

This project uses hatch for development, which can be installed via pipx.

To get started, cd into this directory and run:

hatch shell

This command will source a python virtual environment with all the necessary development dependencies, as well as chromoscope installed in development mode. You can read more about environments in the hatch documentation.

You can then launch Jupyter:

juptyer lab

and navigate to the notebooks/playground.ipynb to use the Viewer.

All development commands are run from the project root, from a terminal:

Command	Action
hatch run test	Run unit tests with pytest in latest Python version.
hatch run test:test	Run unit tests with pytest in all target Python versions.
hatch version	Version the python package. Read more in the docs
hatch build	Build the sdist and wheels for PyPI. Generates dist/
hatch publish	Publish the package to PyPI. Requires API keys.

License

chromoscope is distributed under the terms of the MIT license.