Tools for bioinformatics and glue for RLR analysis pipeline
Project description
COBRA Tools
An assortment of tools used by COBRA Lab for bioinformatics.
Getting Started
These instructions will get you a copy of the project up and running on your local machine for development and testing purposes.
Prerequisites
Requires Python 3.6 or later. All other requirements are included in requirements.txt
Installing
A step by step series of examples that tell you how to get a development env running
Say what the step will be
Give the example
And repeat
until finished
End with an example of getting some data out of the system or using it for a little demo
Unit testing
Run unit tests with
cd general
pytest -sv --cov-report term-missing --cov=models
Linting
Lint with
cd general
pylint *.py models tests
Note that pylint treats all module-level variables as constants.
Also
cd general
flake8
Type Checking
Run static type checking (from project root) with
mypy general/*.py general/tests general/models
Contributing
Please read SOMETHING HERE for details and process for submitting pull requests to us.
Versioning
Something about versioning here
Authors
- Clayton Cafiero - Initial work
See also the list of contributors who participated in this project.
License
This project is licensed under the GPLv3 license - see the LICENSE.md file for details
PyPi
Project details
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Source Distribution
Built Distribution
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