Python wrapper for the OHDSI R packages

Project description

python-ohdsi

Python wrappers for (some) OHDSI tools. This project has been initiated for supporting OMOP data sources in vantage6.

Make sure you have a working R environment with the OHDSI packages installed.

Building documentation

cd docs
make html

You can set the IGNORE_R_IMPORTS environment variable to ignore the R imports in the documentation. This is useful when you don't have the R packages installed but want to build the documentation anyway.

TODO

Packages to be wrapped:

Capr
CirceR
CohortGenerator
SqlRender
DatabaseConnector
FeatureExtraction
FeatureExtractionApi (custom package to wrap FeatureExtraction module in a REST API)

Release packages: ohdsi-circe, ohdsi-capr, ohdsi-cohortgenerator, ohdsi-sqlrender, ohdsi-databaseconnector, ohdsi-featureextraction

Some notes

installing some OHDSI packages required the --no-multiarch flag: INSTALL_opts=c("--no-multiarch").

Project details

Release history Release notifications | RSS feed

0.3.0

Aug 15, 2023

0.2.4

Aug 10, 2023

0.2.3

Jul 26, 2023

This version

0.2.2

Jul 14, 2023

0.2.1

Jul 11, 2023

0.2.0

Jun 14, 2023

0.1.0

Jun 13, 2023

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