Compyrtment is a simple Python library to work with compartment models. It’s a simple tool to aid with fast prototyping with models such as the SIR, SIS and SEIR epidemic models or the Lotka-Volterra model of predation. It supports:
Designing models with arbitrary states and constant, linear and quadratic couplings between them;
Numerical integration of the ODE system of a model;
Numerical integration of ‘sensitivity curves’ - the gradient of each curve with respect to parameters as well as initial conditions;
Fitting a model’s parameters to existing data;
Stochastic simulation using Gillespie’s algorithm
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