News 10/08/24
- Update with comseg 1.8.1: Compatibility with SOPA : (https://gustaveroussy.github.io/sopa/tutorials/comseg/)
Support
If you have any questions relative to the package or bug, please open an issue in this repository.
ComSeg framework
A detail documentation is available at https://comseg.readthedocs.io/
Single cell spatial RNA profiling
ComSeg is an algorithm for single cell spatial RNA profiling in image-based transcriptomic data.
It takes as input a csv with the spot coordinates and output an anndata object with the genes expression and coordinates of each cell.
Citation
Defard, T., Laporte, H., Ayan, M. et al. A point cloud segmentation framework for image-based spatial transcriptomics. Commun Biol 7, 823 (2024). https://doi.org/10.1038/s42003-024-06480-3
1 maintainer
Release files for ComSeg 1.8.5
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| comseg-1.8.5.tar.gz | 33.1 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| ComSeg-1.8.5-py3-none-any.whl | Python 3 | none | any | Details |
Total release size:70.4 kB
Release files / comseg-1.8.5.tar.gz
| Download URL | comseg-1.8.5.tar.gz |
|---|---|
| Size | 33.1 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/5.0.0 CPython/3.8.10
|
Release files / ComSeg-1.8.5-py3-none-any.whl
| Download URL | ComSeg-1.8.5-py3-none-any.whl |
|---|---|
| Size | 37.3 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/5.0.0 CPython/3.8.10
|
