Common repository for connectomics-related libraries.
Project description
Connectomics
Note: Under heavy development
This repository is currently under significant development, and should not be considered stable. Semantic versioning is not guaranteed for now; APIs may - and likely will - change often and without notice.
About this repository
Common code for analyzing volumetric datasets for connectomic reconstruction, including geometric primitives like BoundingBox
and BoxGenerator
, and dealing with segmentation ID ranges, including relabeling, making ranges contiguous, and testing whether two volumes contain equivalent sequences.
Coming soon: pipeline primitives to process subvolumes.
Projects using Connectomics
- SOFIMA - SOFIMA (Scalable Optical Flow-based Image Montaging and Alignment) is a tool for stitching, aligning and warping large 2d, 3d and 4d microscopy datasets.
This is not an officially supported Google product.
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