Common repository for connectomics-related libraries.
Project description
Connectomics
Note: Under heavy development
This repository is currently under significant development, and should not be considered stable. Semantic versioning is not guaranteed for now; APIs may - and likely will - change often and without notice.
About this repository
Common code for analyzing volumetric datasets for connectomic reconstruction, including geometric primitives like BoundingBox and BoxGenerator, and dealing with segmentation ID ranges, including relabeling, making ranges contiguous, and testing whether two volumes contain equivalent sequences.
Coming soon: pipeline primitives to process subvolumes.
Projects using Connectomics
- SOFIMA - SOFIMA (Scalable Optical Flow-based Image Montaging and Alignment) is a tool for stitching, aligning and warping large 2d, 3d and 4d microscopy datasets.
This is not an officially supported Google product.
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