coppafish
coppafish is a data analysis pipeline for decoding coppaFISH (combinatorial padlock-probe-amplified fluorescence in situ hybridization) datasets. coppaFISH is a method for in situ transcriptomics which produces a series of images arranged in terms of tiles, rounds and channels. coppafish then determines the distribution of genes via image processing, spot detection, registration and gene calling.
Prerequisites
Python >= 3.8
Documentation
For more information on installation and usage, please see the documentation.
2 maintainers
Metadata
2 maintainers
Release files for coppafish 0.1.6
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| coppafish-0.1.6.tar.gz | 226.7 kB | Without provenance | Details for coppafish-0.1.6.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| coppafish-0.1.6-py3-none-any.whl | Python 3 | none | any | Details for coppafish-0.1.6-py3-none-any.whl |
Total release size: 507.8 kB
Release files / coppafish-0.1.6.tar.gz
| Download URL | coppafish-0.1.6.tar.gz |
|---|---|
| Size | 226.7 kB |
| Tags | Source |
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twine/4.0.1 CPython/3.9.13
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Release files / coppafish-0.1.6-py3-none-any.whl
| Download URL | coppafish-0.1.6-py3-none-any.whl |
|---|---|
| Size | 281.2 kB |
| Tags | Python 3 |
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twine/4.0.1 CPython/3.9.13
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Security for coppafish 0.1.6
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