Collect and annotate Mycobacterium tuberculosis WGS data for CRISPR investigations.
Project description
CRISPRbuilder_TB
This README.md gives you the gist of the CRISPRbuilder_TB package. Please refer to crisprbuilder_tb.md included in the package for more detailed explanation.
Purpose of this package
Collect and annotate Mycobacterium tuberculosis whole genome sequencing data for CRISPR investigation.
Requirements
CRISPRbuilder_TB needs the following dependencies to work:
- python >= "3.6"
- xlrd >= "1.2.0"
- xmltodict >= "0.12.0"
- biopython >= "1.77"
These different versions are automatically downloaded when installing the CRISPRbuilder_TB package.
Installation
Install the package by writing in the command prompt:
pip3 install crisprbuilder_tb
.
How to use this package
The most often common instruction for this package is:
python -m crisprbuilder_tb --collect {SRA_reference}
.
See the attached criprbuilder-tb.md for a comprehensive explanation.
History
First version of this package, which is 1.0.0 was published on July 2020.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Hashes for crisprbuilder_tb-0.1.31-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | b896d2ca3a7867c0561b31a9298eef562c2ca35606170d150dce6941215669d2 |
|
MD5 | 29b18116ce72558dfc03ea53105f8b1d |
|
BLAKE2b-256 | f31c71a2364d454470c321187089bced9b6807d8d432b8ff8d96d4be81a0fced |