Collect and annotate Mycobacterium tuberculosis WGS data for CRISPR investigations.
Project description
CRISPRbuilder_TB
This README.md gives you the gist of the CRISPRbuilder_TB package. Please refer to crisprbuilder_tb.md included in the package for more detailed explanation.
Purpose of this package
Collect and annotate Mycobacterium tuberculosis whole genome sequencing data for CRISPR investigation.
Requirements
CRISPRbuilder_TB needs the following dependencies to work:
- python >= "3.6"
- xlrd >= "1.2.0"
- xmltodict >= "0.12.0"
- biopython >= "1.77"
These different versions are automatically downloaded when installing the CRISPRbuilder_TB package.
Installation
Install the package by writing in the command prompt:
pip3 install crisprbuilder_tb.
How to use this package
The most often common instruction for this package is:
python -m crisprbuilder_tb --collect {SRA_reference}.
See the attached criprbuilder-tb.md for a comprehensive explanation.
History
First version of this package, which is 1.0.0 was published on July 2020.
Release history Release notifications | RSS feed
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