Cycle Enrichr
Enrichment of gene sets with no gene annotations leveraging ARCHS4 and PrismExp gene function prediction.
Usage
Installation
pip3 install cycleenrichr
Download Prediction File
# download precomputed predictions file from PrismExp
import cycleenrichr as cycle
cycle.load.download("predictions.h5")
Run Set Enrichment for Gene Set Library
import cycleenrichr as cycle
# load gene set libary from Enrichr
library = cycle.enrichr.get_library("KEGG_2021_Human")
predictions_path = "predictions.h5"
result = cycle.enrichment.enrich(library, predictions_path)
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