cycquery 0.1.0

A tool to query EHR databases

cyclops-query

cyclops-query is a tool for querying EHR databases.

🐣 Getting Started

Installing cyclops-query using pip

python3 -m pip install cycquery

🧑🏿‍💻 Developing

Using poetry

The development environment can be set up using poetry. Hence, make sure it is installed and then run:

python3 -m poetry install
source $(poetry env info --path)/bin/activate

API documentation is built using Sphinx and can be locally built by:

cd docs
make html SPHINXOPTS="-D nbsphinx_allow_errors=True"

Contributing

Contributing to cyclops-query is welcomed. See Contributing for guidelines.

📚 Documentation

🎓 Citation

Reference to cite when you use cyclops-query in a project or a research paper:

@article {Krishnan2022.12.02.22283021,
	author = {Krishnan, Amrit and Subasri, Vallijah and McKeen, Kaden and Kore, Ali and Ogidi, Franklin and Alinoori, Mahshid and Lalani, Nadim and Dhalla, Azra and Verma, Amol and Razak, Fahad and Pandya, Deval and Dolatabadi, Elham},
	title = {CyclOps: Cyclical development towards operationalizing ML models for health},
	elocation-id = {2022.12.02.22283021},
	year = {2022},
	doi = {10.1101/2022.12.02.22283021},
	publisher = {Cold Spring Harbor Laboratory Press},
	URL = {https://www.medrxiv.org/content/early/2022/12/08/2022.12.02.22283021},
	journal = {medRxiv}
}