DAVIDpy
Python3 extension for DAVID Bioinformatics Tool
! Current version supports only Chart Reports !
DAVIDpy is based on DAVID Web Service so it has the same restrictions (max. 200 jobs in a day).
Installation
You can install DAVIDpy from PyPI using pip:
pip3 install DAVIDpy
Also you should register HERE before using this tool.
Usage
Command-line tool
Easy and fast way to run DAVID analysis.You should use it if:
- You want just to save a result (.tsv or .csv).
- You need a fast way to have a look on result right in the command line.
To perform analysis, run:
davidpy -i <genes>
where <genes> is a genes list or a text file with genes.
Some optional arguments:
--tsv and --csv - save result at working directory.
--full - show more columns.
Python package
More flexible way to run DAVID analysis.It allows to work with results as a Pandas DataFrame object.
Common way to perform analysis:
import davidpy
client = davidpy.DAVID_start(input_list)
df = davidpy.get_chart(client)
If you need, you can use client object to do more complex requests, using WSDL operations listed here. For example:
import davidpy
client = davidpy.DAVID_start(input_list)
client.service.getListReport()
Metadata
Release files for DAVIDpy 0.1.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| DAVIDpy-0.1.1.tar.gz | 19.3 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| DAVIDpy-0.1.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 37.0 kB
Release files / DAVIDpy-0.1.1.tar.gz
| Download URL | DAVIDpy-0.1.1.tar.gz |
|---|---|
| Size | 19.3 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.7.1 importlib_metadata/4.10.1 pkginfo/1.8.2 requests/2.27.1 requests-toolbelt/0.9.1 tqdm/4.50.2 CPython/3.8.9
|
Release files / DAVIDpy-0.1.1-py3-none-any.whl
| Download URL | DAVIDpy-0.1.1-py3-none-any.whl |
|---|---|
| Size | 17.6 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.7.1 importlib_metadata/4.10.1 pkginfo/1.8.2 requests/2.27.1 requests-toolbelt/0.9.1 tqdm/4.50.2 CPython/3.8.9
|