Skip to main content

DAVIDpy

Python3 extension for DAVID Bioinformatics Tool

! Current version supports only Chart Reports !

DAVIDpy is based on DAVID Web Service so it has the same restrictions (max. 200 jobs in a day).

Installation

You can install DAVIDpy from PyPI using pip:

pip3 install DAVIDpy

Also you should register HERE before using this tool.

Usage

Command-line tool Easy and fast way to run DAVID analysis.

You should use it if:

  • You want just to save a result (.tsv or .csv).
  • You need a fast way to have a look on result right in the command line.

To perform analysis, run:

davidpy -i <genes>

where <genes> is a genes list or a text file with genes.

Some optional arguments: --tsv and --csv - save result at working directory. --full - show more columns.

Python package More flexible way to run DAVID analysis.
It allows to work with results as a Pandas DataFrame object.

Common way to perform analysis:

import davidpy
client = davidpy.DAVID_start(input_list)
df = davidpy.get_chart(client)

If you need, you can use client object to do more complex requests, using WSDL operations listed here. For example:

import davidpy
client = davidpy.DAVID_start(input_list)
client.service.getListReport()

Metadata

Release files for DAVIDpy 0.1.1

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for DAVIDpy 0.1.1
File Size Uploaded
DAVIDpy-0.1.1.tar.gz 19.3 kB Details

Built distribution (wheel)

Table of built distributions (wheels) for DAVIDpy 0.1.1
File Interpreter ABI Platform
DAVIDpy-0.1.1-py3-none-any.whl Python 3 none any Details

Total release size: 37.0 kB

Release files / DAVIDpy-0.1.1.tar.gz

Download URL DAVIDpy-0.1.1.tar.gz
Size 19.3 kB
Tags Source
SHA-256 checksum
How to use checksums
c6a09406eb78cbb7e28028dcd768359e55883eb7286ca6be6f5dfc99b2667067
BLAKE2b-256 checksum
How to use checksums
bdced342ba3feed0c0bc89b857497e01b36e9365e44b6af4583db9e7ea177116
Upload date
Uploaded using Trusted Publishing?
What is trusted publishing?
No
Uploaded via twine/3.7.1 importlib_metadata/4.10.1 pkginfo/1.8.2 requests/2.27.1 requests-toolbelt/0.9.1 tqdm/4.50.2 CPython/3.8.9

Release files / DAVIDpy-0.1.1-py3-none-any.whl

Download URL DAVIDpy-0.1.1-py3-none-any.whl
Size 17.6 kB
Tags Python 3
SHA-256 checksum
How to use checksums
0da8a4eda4dca3cb0f8ca1f2b3e87c4f21c1327185fe006359943eabf4ad9530
BLAKE2b-256 checksum
How to use checksums
d29d592ceed012ef46357d2d59a718ed795233febf740f8e5cee8b8455bf3629
Upload date
Uploaded using Trusted Publishing?
What is trusted publishing?
No
Uploaded via twine/3.7.1 importlib_metadata/4.10.1 pkginfo/1.8.2 requests/2.27.1 requests-toolbelt/0.9.1 tqdm/4.50.2 CPython/3.8.9

Release history Release notifications | RSS feed

This release

0.1.1 This release

2 release files

0.1.0

2 release files

Anthropic, PBC Visionary sponsor Bloomberg Visionary sponsor Hudson River Trading Visionary sponsor Meta Visionary sponsor NVIDIA Visionary sponsor Microsoft Sustainability sponsor Depot Continuous Integration AWS Cloud computing and Security Sponsor Datadog Monitoring Fastly CDN Google Download Analytics Sentry Error logging StatusPage Status page