deviaTE 0.2.1.1

Analysis and visualization of mobile genetic element composition

# deviaTE

deviaTE is a python tool for the analysis and visualization of mobile genetic element sequences.

## Dependencies

• python 3.6+

• pip for python3 (https://pip.pypa.io/en/stable/installing/)

• samtools (tested with version 1.6 and 1.9)

• bwa (tested with version 0.7.17)

• R (tested with version 3.4.3) * required R packages are installed automatically upon first usage

samtools and bwa need to be in your $PATH

## Installation

`pip3 install git+https://github.com/W-L/deviaTE/`

## Usage manual and walkthroughs

A manual and a walkthrough with examples using publicly available data can be found here:

• [Manual](https://github.com/W-L/deviaTE/blob/master/doc/MANUAL.md)

• [Walkthrough](https://github.com/W-L/deviaTE/blob/master/doc/WALKTHROUGH.md)

## Bugs, issues, questions, suggestions … If you find any problems, have questions or ideas for further improvement please use the issue tracker on this repository, thanks!

## License deviaTE is licensed under the GPLv3 License