keras implementation of DiSTNet & utilities for mother machine data analysis with keras
Project description
DistNet: Deep Tracking by displacement regression: application to bacteria growing in the Mother Machine
This repo contains sources for:
- Distnet model keras/tensorflow implementation (link to pre-print). Tu use:
disnet.keras_models.get_distnet_model() - Flexible keras unet implementation / unet++ implementatoin. See:
disnet.keras_models.unet.py - A class of dataset_iterator for training:
distnet.data_generator.dy_iterator.py - A class of image data generator with specific transformations for mother machine data. See
distnet.data_generator.image_data_generator_mm.py - Utilities for models in keras/tensorflow and image processing. See
distnet.utils.pre_processing.py
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