DiST-Net 0.1.5

keras implementation of DiSTNet & utilities for mother machine data analysis with keras

DistNet: Deep Tracking by displacement regression: application to bacteria growing in the Mother Machine

Link to preprint

This repo contains sources for:

• Distnet model keras/tensorflow implementation (link to pre-print). Tu use: disnet.keras_models.get_distnet_model()
• Flexible keras unet implementation / unet++ implementatoin. See: disnet.keras_models.unet.py
• A class of dataset_iterator for training: distnet.data_generator.dy_iterator.py
• A class of image data generator with specific transformations for mother machine data. See distnet.data_generator.image_data_generator_mm.py
• Utilities for models in keras/tensorflow and image processing. See distnet.utils.pre_processing.py