Website: https://divbrowse.ipk-gatersleben.de
Documentation: https://divbrowse.readthedocs.io
Paper: https://doi.org/10.1093/gigascience/giad025
Table of contents:
About DivBrowse
DivBrowse is a web application for interactive exploration and analysis of very large SNP matrices.
It offers a novel approach for interactive visualization and analysis of genomic diversity data and optionally also gene annotation data. The use of standard file formats for data input supports interoperability and seamless deployment of application instances based on established bioinformatics pipelines. The possible integration into 3rd-party web applications supports interoperability and reusability.
The integrated ad-hoc calculation of variant summary statistics and principal component analysis enables the user to perform interactive analysis of population structure for single genetic features like genes, exons and promoter regions. Data interoperability is achieved by the possibility to export genomic diversity data for genomic regions of interest in standardized VCF files.
Try out DivBrowse
If you want to test DivBrowse please visit the demo instances listed here: https://divbrowse.ipk-gatersleben.de/#demo-instances
Screenshots
Usage workflow concept
Architecture
2 maintainers
Metadata
2 maintainers
Release files for divbrowse 1.1.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| divbrowse-1.1.0.tar.gz | 2.9 MB | Without provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| divbrowse-1.1.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 4.5 MB
Release files / divbrowse-1.1.0.tar.gz
| Download URL | divbrowse-1.1.0.tar.gz |
|---|---|
| Size | 2.9 MB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.1.7 CPython/3.7.6 Windows/10
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Release files / divbrowse-1.1.0-py3-none-any.whl
| Download URL | divbrowse-1.1.0-py3-none-any.whl |
|---|---|
| Size | 1.6 MB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.1.7 CPython/3.7.6 Windows/10
|
Security for divbrowse 1.1.0
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