DREEM solves RNA structure ensembles using chemical probing data
Project description
[](https://github.com/rouskinlab/dreem/actions/workflows/documentation.yml) [](https://github.com/rouskinlab/dreem/actions/workflows/tests.yaml)
# DREEM
Prof. Silvi Rouskin’s [DREEM algorithm](https://www.nature.com/articles/s41586-020-2253-5).
## Installation
Installation instructions [here](https://rouskinlab.github.io/dreem/dreem/installation.html).
## Documentation
The documentation is available on [Github Pages](https://rouskinlab.github.io/dreem).
## Contributors
Yves Martin, Scott Grote, Matthew Allan, Albéric de Lajarte.
## For developers
Before pushing to main, ensure that the code passes the tests:
` pytest test/test_pipeline.py `
and that the docs compile:
` cd docs make html `
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
File details
Details for the file dreem-0.1.14.tar.gz.
File metadata
- Download URL: dreem-0.1.14.tar.gz
- Upload date:
- Size: 1.0 MB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.2 CPython/3.10.12
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | bc28e0e509070bd09b1222bb337f6bb2c0cdb1c106007819fa78e628cd30eb91 |
|
| MD5 | e61ddf6c8b4bf1cc764c38aca3948377 |
|
| BLAKE2b-256 | e65bb1f40bf0a6c55698900329a3b28b95df29ed54b77e10b26236fe233e7618 |
File details
Details for the file dreem-0.1.14-py3-none-any.whl.
File metadata
- Download URL: dreem-0.1.14-py3-none-any.whl
- Upload date:
- Size: 1.1 MB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.2 CPython/3.10.12
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 0f3a8a169c750ab0af1bee2e4de23ac370346673b7c508544aaa444b10cfc398 |
|
| MD5 | db7f15a725d5ede099e4ca7631c07421 |
|
| BLAKE2b-256 | f77a753908b21501bddbb48b50d7803486b472277e245961dba8b0464c78d07a |
](https://github.com/rouskinlab/dreem/actions/workflows/documentation.yml){kind=link}
](https://github.com/rouskinlab/dreem/actions/workflows/tests.yaml){kind=link}