dsne 0.1.6

DSNE algorithms

DSNE

Visualizing Data Velocity using DSNE. Preprint. Python library containing DSNE algorithms.

Installation

Requirements

• cblas or openblas. Tested version is v0.2.5 and v0.2.6 (not necessary for OSX).

From Github:

git clone https://github.com/songtingstone/dsne
cd dsne/
make cleanpackage 

From PyPI:

pip install dsne

From conda:

conda install -c maxibor dsne

Usage

Basic usage:

from dsne import DSNE
W = DSNE(X,V,Y)

Examples

• Simulation with Exact Velocity Embeddings
• Simulation with Approximate Velocity Embeddings
• Pancreas

Algorithms

DSNE

Direction Stochastic Nearnest Neighbor Embedding of Velocity